Difference between revisions of "Debian Known Issues"

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(Added advice about missing dependency for Denian 10.)
(Added advice regarding imagemagick preview/thumbnail generation.)
 
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If you come across any unknown Eprints-specific issues please send a bug report to the eptech mailing list.
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If you come across any unknown EPrints-specific issues please send a bug report to the eptech mailing list.
 
[[Category:Debian and Ubuntu]]
 
[[Category:Debian and Ubuntu]]
 
==Known Issues==
 
==Known Issues==
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or  
 
or  
  
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* Edit your archives 10_core.pl and change its location - as eprints user
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* Edit your archives 10_core.pl and change its location - as EPrints user
 
    
 
    
−
   # vi archives/archive_name/cfg/cfg.d/10_core.pl
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   vi archives/ARCHIVEID/cfg/cfg.d/10_core.pl
  
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change the host line to your new host eg:
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change the host line to your new host e.g.:
 
    
 
    
 
   $c->{host} = 'example.org';
 
   $c->{host} = 'example.org';
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Regenerate your apache config:
 
Regenerate your apache config:
  
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   # bin/generate_apacheconf
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   bin/generate_apacheconf
  
 
As root restart your apache
 
As root restart your apache
 
    
 
    
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   # apache2ctl stop
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   # apache2ctl graceful
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  # apache2ctl start
 
  
 
Now you should be able to log in from the new url by pointing firefox at http://example.org
 
Now you should be able to log in from the new url by pointing firefox at http://example.org
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===Wrong XML::LibXML Version===
 
===Wrong XML::LibXML Version===
  
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This affects mainly Ubuntu and older Debian distributions where the libxml package is too old. The package installer doesn't check the XML::LibXML version. Either install XML::LibXML 1.63 from cpan or disable it by setting enable_libxml to 0 in /usr/share/eprints3/perl_lib/EPrints/SystemSettings.pm.
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This affects mainly Ubuntu and older Debian distributions where the libxml package is too old. The package installer doesn't check the XML::LibXML version. Either install XML::LibXML 1.63 from cpan or disable it by setting enable_libxml to 0 in <code>perl_lib/EPrints/SystemSettings.pm</code>.
  
 
Installing 1.63 from cpan (as root):
 
Installing 1.63 from cpan (as root):
  
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  cpan XML::LibXML
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  # cpan XML::LibXML
  
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Alternatively you could follow the instructions at [[Installing_GDOME_on_Debian]] to install the GDOME XML library.
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Without either XML::LibXML or XML::GDOME, EPrints uses a bundled XML::DOM implementation that has much lower performance and poorer Unicode support.  In future versions of EPrints only XML::LibXML will be supported.  As this is widely available across the most commonly used Linux operating systems.
−
 
 
−
Without either XML::LibXML or XML::GDOME Eprints uses a bundled XML::DOM implementation that has much lower performance and poorer Unicode support.
 
  
 
Note that you can build Debian packages from CPAN modules using [http://packages.debian.org/dh-make-perl dh-make-perl] in order to keep track of those modules you've been building by yourself. Provided you've already configured your CPAN environment (that is, at least your proxies and servers), you can survive with:
 
Note that you can build Debian packages from CPAN modules using [http://packages.debian.org/dh-make-perl dh-make-perl] in order to keep track of those modules you've been building by yourself. Provided you've already configured your CPAN environment (that is, at least your proxies and servers), you can survive with:
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===DiskSpace.pm measuring disk usage (reiserFS)===
 
===DiskSpace.pm measuring disk usage (reiserFS)===
  
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Not supported in the default package install, to add support add the following to the array defined in $EPRINTS_HOME/perl_lib/Filesys/DiskSpace.pm
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Not supported in the default package install, to add support add the following to the array defined in <code>$EPRINTS_HOME/perl_lib/Filesys/DiskSpace.pm</code>
  
 
   1448756819 => "REISERFS_SUPER_MAGIC",    # 0x565A4653
 
   1448756819 => "REISERFS_SUPER_MAGIC",    # 0x565A4653
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Note that this was tested in a Debian GNU/Linux virtual private server running under Virtuozzo hypervision. Other filesystems, such as simfs, don't usually give any problems with DiskSpace.pm.
 
Note that this was tested in a Debian GNU/Linux virtual private server running under Virtuozzo hypervision. Other filesystems, such as simfs, don't usually give any problems with DiskSpace.pm.
  
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===Debian 10 (Buster) no longer uses MySQL===
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===Debian 10+ (Buster, Bullseye, Bookworm etc.) does not allow unprivileged access to MySQL root user===
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Debian 10 has swicthed from using MySQL to MariaDB, so when trying to install from APT you will likley see an error like:
+
This is also an issue with Ubuntu 20.04+, thus see advice at [[Installing_EPrints_on_Debian/Ubuntu#MySQL_root_user_cannot_be_used_2|Installing EPrints on Debian/Ubuntu]].
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The following information may help to resolve the situation:
 
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The following packages have unmet dependencies:
 
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  eprints : Depends: mysql-server but it is not installable
 
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            Depends: mysql-client but it is not installable
 
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E: Unable to correct problems, you have held broken packages.
 
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To solve this problem for pre-3.4.3 version of EPrints you will need to add the MySQL APT repository.  EPrints 3.4.3+ should allow either MySQL or MariaDB to be installed.  To add the MySQL APT repository for Debian 10 (Buster) follow the instructions below.
 
−
<ol>
 
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  <li>1. As the root user, change directory to ''/tmp'' and download the MySQL configuration DEB package using ''wget''</li>
 
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cd /tmp
 
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wget https://dev.mysql.com/get/mysql-apt-config_0.8.13-1_all.deb
 
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<li>Install the DEB package using dpkg.  When prompted you shoudl not need to change any settings (i.e. stick witj MySQL 8.0) so you can select OK.  (If you are upgrading from Debian 9 it might be best to choose 5.7 to stay on the same version).</li>
 
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dpkg -i mysql-apt-config*
 
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<li>Update APT to get new MySQL repository listings
 
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apt-get update
 
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</ol>
 
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You should now be able to install eprints through APT without any further issues.
 
  
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===Debian 10 (Buster) does not install CGI.pm===
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===ImageMagick policy settings prevent PDF preview/thumbnail generation===
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Debian 10's (Buster) dependency tree seems to be different to older versions and as a result does not install CGI.pm.  To install this on pre-EPrints 3.4.3 versions, install the following additional dependency (as the root user) before trying to run ''epadmin''.
+
This was identified as an issue with Debian 12 (Bookworm) but may also be an issue with earlier Debian version.  ImageMagick has a policy which means it will not read PDF documents, which EPrints requires to generate preview and thumbnails of these PDFs.  To fix this edit <tt>/etc/ImageMagick-6/policy.xml</tt> and change the line:
−
  apt-get install libcgi-pm-perl
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<policy domain="coder" rights="none" pattern="PDF" />
 +
To:
 +
<policy domain="coder" rights="<b>read</b>" pattern="PDF" />

Latest revision as of 11:22, 12 March 2024

If you come across any unknown EPrints-specific issues please send a bug report to the eptech mailing list.

Known Issues

debian packages for version 3.3.13: Various problems related to subjects and divisions

Issue #291 has been resolved only after building debian packages for version 3.3.13.

This leads to problems with all operations reading tree structures from flat text files:

  • bin/import_subjects produces essentially empty trees
  • after creating a new repository with default divisions and subjects the divisions and subjects remain empty and more importantly, due to empty values most operations within the webinterface involving divisions or subjects yield an error, rendering the whole repository useless.

Solution: Manual edit

debian packages for version 3.3.13: links to /id/eprint/<NUMBER> yield 500 Internal Server Error

Solution: Manual edit

No Tools Available on Login

This occurs if you are using certain Firefox 3 versions on debian/ubuntu and you have your repository at http://localhost.

This is due to the fact that Firefox 3 won't let you store cookies for domains which don't have a domain. localhost.localdomain may work (untested) however the fix below encourages the use of example.org.

Basically it will work under most other browsers or you can do the following fix.

  • Think of a domain for your repository and add this to your hosts file in /etc/hosts (here example.org) by doing the following as root.
 # vi /etc/hosts

Add the line 

 127.0.0.1 example.org
  • Then either create a new archive with example.org as its location

or

  • Edit your archives 10_core.pl and change its location - as EPrints user
 vi archives/ARCHIVEID/cfg/cfg.d/10_core.pl

change the host line to your new host e.g.: 

 $c->{host} = 'example.org';

Regenerate your apache config: 

 bin/generate_apacheconf

As root restart your apache 

 # apache2ctl graceful

Now you should be able to log in from the new url by pointing firefox at http://example.org

Wrong XML::LibXML Version

This affects mainly Ubuntu and older Debian distributions where the libxml package is too old. The package installer doesn't check the XML::LibXML version. Either install XML::LibXML 1.63 from cpan or disable it by setting enable_libxml to 0 in perl_lib/EPrints/SystemSettings.pm.

Installing 1.63 from cpan (as root): 

# cpan XML::LibXML

Without either XML::LibXML or XML::GDOME, EPrints uses a bundled XML::DOM implementation that has much lower performance and poorer Unicode support. In future versions of EPrints only XML::LibXML will be supported. As this is widely available across the most commonly used Linux operating systems.

Note that you can build Debian packages from CPAN modules using dh-make-perl in order to keep track of those modules you've been building by yourself. Provided you've already configured your CPAN environment (that is, at least your proxies and servers), you can survive with: 

dh-make-perl --install --notest --cpan XML::LibXML

DiskSpace.pm measuring disk usage (reiserFS)

Not supported in the default package install, to add support add the following to the array defined in $EPRINTS_HOME/perl_lib/Filesys/DiskSpace.pm 

 1448756819 => "REISERFS_SUPER_MAGIC",    # 0x565A4653

Many thanks to José Miguel Parrella Romero for pointing this out.

Note that this was tested in a Debian GNU/Linux virtual private server running under Virtuozzo hypervision. Other filesystems, such as simfs, don't usually give any problems with DiskSpace.pm.

Debian 10+ (Buster, Bullseye, Bookworm etc.) does not allow unprivileged access to MySQL root user

This is also an issue with Ubuntu 20.04+, thus see advice at Installing EPrints on Debian/Ubuntu.

ImageMagick policy settings prevent PDF preview/thumbnail generation

This was identified as an issue with Debian 12 (Bookworm) but may also be an issue with earlier Debian version. ImageMagick has a policy which means it will not read PDF documents, which EPrints requires to generate preview and thumbnails of these PDFs. To fix this edit /etc/ImageMagick-6/policy.xml and change the line: 

<policy domain="coder" rights="none" pattern="PDF" />

To: 

<policy domain="coder" rights="read" pattern="PDF" />
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